PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S14260.10
Common NameJCGZ_22420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 144aa    MW: 16152.5 Da    PI: 4.467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S14260.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-106588124
                   --S---SGGGGTS--TTTTT-SS- CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFa 24
                   y   +C+++ +tG+C yGd+CkF+
  Jcr4S14260.10 65 YQPDICKDYKETGYCGYGDSCKFM 88
                   67789******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-86296IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036491IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.766492IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-86588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-106595IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MADSGESQQP APVSGNEKLY KGIHGYTDHK AGFRREQTIS SEKAGGSHGP LRASAHIRVS  60
ARFDYQPDIC KDYKETGYCG YGDSCKFMYD RGDYKPGWQL EKEWEEAEKI RKRNLALGED  120
EDGLGESDDN EDDDDSLSFA ESLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065710.12e-78PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_012065716.12e-78PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX846e-71C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A067L9A61e-103A0A067L9A6_JATCU; Uncharacterized protein
STRINGscaffold_100114.11e-68(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.14e-70C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]